Package: lit 1.0.1

lit: Latent Interaction Testing for Genome-Wide Studies

Identifying latent genetic interactions in genome-wide association studies using the Latent Interaction Testing (LIT) framework. LIT is a flexible kernel-based approach that leverages information across multiple traits to detect latent genetic interactions without specifying or observing the interacting variable (e.g., environment). LIT accepts standard PLINK files as inputs to analyze large genome-wide association studies.

Authors:Andrew Bass [aut, cre], Michael Epstein [aut]

lit_1.0.1.tar.gz
lit_1.0.1.zip(r-4.7)lit_1.0.1.zip(r-4.6)lit_1.0.1.zip(r-4.5)
lit_1.0.1.tgz(r-4.6-x86_64)lit_1.0.1.tgz(r-4.6-arm64)lit_1.0.1.tgz(r-4.5-x86_64)lit_1.0.1.tgz(r-4.5-arm64)
lit_1.0.1.tar.gz(r-4.7-arm64)lit_1.0.1.tar.gz(r-4.7-x86_64)lit_1.0.1.tar.gz(r-4.6-arm64)lit_1.0.1.tar.gz(r-4.6-x86_64)
lit_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
lit/json (API)
NEWS

# Install 'lit' in R:
install.packages('lit', repos = c('https://ajbass.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ajbass/lit/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

4.15 score 2 stars 14 scripts 194 downloads 5 exports 31 dependencies

Last updated from:451458885c. Checks:11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE190
linux-devel-x86_64NOTE174
source / vignettesOK274
linux-release-arm64NOTE181
linux-release-x86_64NOTE180
macos-release-arm64NOTE96
macos-release-x86_64NOTE264
macos-oldrel-arm64NOTE156
macos-oldrel-x86_64NOTE449
windows-develNOTE191
windows-releaseNOTE160
windows-oldrelNOTE176
wasm-releaseOK163

Exports:gamut_plinklitlit_plinkmarginalmarginal_plink

Dependencies:bitbit64clicliprCompQuadFormcpp11crayondplyrgenericsgeniogluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6RcppRcppArmadilloRcppEigenreadrrlangtibbletidyselecttzdbutf8vctrsvroomwithr

lit Package Vignette

Andrew J. Bass and Michael P. Epstein

Rendered fromlit.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2023-08-12
Started: 2023-08-11