Package: lit 1.0.0

Andrew Bass

lit: Latent Interaction Testing for Genome-Wide Studies

Identifying latent genetic interactions in genome-wide association studies using the Latent Interaction Testing (LIT) framework. LIT is a flexible kernel-based approach that leverages information across multiple traits to detect latent genetic interactions without specifying or observing the interacting variable (e.g., environment). LIT accepts standard PLINK files as inputs to analyze large genome-wide association studies.

Authors:Andrew Bass [aut, cre], Michael Epstein [aut]

lit_1.0.0.tar.gz
lit_1.0.0.zip(r-4.5)lit_1.0.0.zip(r-4.4)lit_1.0.0.zip(r-4.3)
lit_1.0.0.tgz(r-4.5-x86_64)lit_1.0.0.tgz(r-4.5-arm64)lit_1.0.0.tgz(r-4.4-x86_64)lit_1.0.0.tgz(r-4.4-arm64)lit_1.0.0.tgz(r-4.3-x86_64)lit_1.0.0.tgz(r-4.3-arm64)
lit_1.0.0.tar.gz(r-4.5-noble)lit_1.0.0.tar.gz(r-4.4-noble)
lit_1.0.0.tgz(r-4.4-emscripten)lit_1.0.0.tgz(r-4.3-emscripten)
lit.pdf |lit.html
lit/json (API)
NEWS

# Install 'lit' in R:
install.packages('lit', repos = c('https://ajbass.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ajbass/lit/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

4.15 score 2 stars 14 scripts 182 downloads 5 exports 32 dependencies

Last updated 2 years agofrom:dee9aa8369. Checks:4 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-win-x86_64NOTEMar 08 2025
R-4.5-mac-x86_64NOTEMar 08 2025
R-4.5-mac-aarch64NOTEMar 08 2025
R-4.5-linux-x86_64NOTEMar 08 2025
R-4.4-win-x86_64NOTEMar 08 2025
R-4.4-mac-x86_64NOTEMar 08 2025
R-4.4-mac-aarch64NOTEMar 08 2025
R-4.4-linux-x86_64NOTEMar 08 2025
R-4.3-win-x86_64OKMar 08 2025
R-4.3-mac-x86_64OKMar 08 2025
R-4.3-mac-aarch64OKMar 08 2025

Exports:gamut_plinklitlit_plinkmarginalmarginal_plink

Dependencies:bitbit64clicliprCompQuadFormcpp11crayondplyrfansigenericsgeniogluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6RcppRcppArmadilloRcppEigenreadrrlangtibbletidyselecttzdbutf8vctrsvroomwithr

lit Package Vignette

Rendered fromlit.Rmdusingknitr::rmarkdownon Mar 08 2025.

Last update: 2023-08-12
Started: 2023-08-11