Package: lit 1.0.0
Andrew Bass
lit: Latent Interaction Testing for Genome-Wide Studies
Identifying latent genetic interactions in genome-wide association studies using the Latent Interaction Testing (LIT) framework. LIT is a flexible kernel-based approach that leverages information across multiple traits to detect latent genetic interactions without specifying or observing the interacting variable (e.g., environment). LIT accepts standard PLINK files as inputs to analyze large genome-wide association studies.
Authors:
lit_1.0.0.tar.gz
lit_1.0.0.zip(r-4.5)lit_1.0.0.zip(r-4.4)lit_1.0.0.zip(r-4.3)
lit_1.0.0.tgz(r-4.4-x86_64)lit_1.0.0.tgz(r-4.4-arm64)lit_1.0.0.tgz(r-4.3-x86_64)lit_1.0.0.tgz(r-4.3-arm64)
lit_1.0.0.tar.gz(r-4.5-noble)lit_1.0.0.tar.gz(r-4.4-noble)
lit_1.0.0.tgz(r-4.4-emscripten)lit_1.0.0.tgz(r-4.3-emscripten)
lit.pdf |lit.html✨
lit/json (API)
NEWS
| # Install 'lit' in R: |
| install.packages('lit', repos = c('https://ajbass.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ajbass/lit/issues
Last updated 1 years agofrom:dee9aa8369. Checks:4 OK, 5 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 07 2025 |
| R-4.5-win-x86_64 | NOTE | Jan 07 2025 |
| R-4.5-linux-x86_64 | NOTE | Jan 07 2025 |
| R-4.4-win-x86_64 | NOTE | Jan 07 2025 |
| R-4.4-mac-x86_64 | NOTE | Jan 07 2025 |
| R-4.4-mac-aarch64 | NOTE | Jan 07 2025 |
| R-4.3-win-x86_64 | OK | Jan 07 2025 |
| R-4.3-mac-x86_64 | OK | Jan 07 2025 |
| R-4.3-mac-aarch64 | OK | Jan 07 2025 |
Exports:gamut_plinklitlit_plinkmarginalmarginal_plink
Dependencies:bitbit64clicliprCompQuadFormcpp11crayondplyrfansigenericsgeniogluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6RcppRcppArmadilloRcppEigenreadrrlangtibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GAMuT | gamut_plink |
| Latent Interaction Testing | lit |
| LIT correcting for dominance effects | lit_h |
| Latent Interaction Testing | lit_plink |
| Marginal (SQ/CP) approach | marginal |
| Marginal (SQ/CP) approach | marginal_plink |