{ "_id": "6a49f4c57a98a23ad0a34bbe", "Package": "lit", "Type": "Package", "Title": "Latent Interaction Testing for Genome-Wide Studies", "Version": "1.0.1", "Authors@R": "c(person(\"Andrew\", \"Bass\", email =\"ab3105@cam.ac.uk\", role = c(\"aut\", \"cre\")),\nperson(\"Michael\", \"Epstein\", email =\"mpepste@emory.edu\", role = c(\"aut\")))", "Maintainer": "Andrew Bass ", "Description": "Identifying latent genetic interactions in genome-wide\nassociation studies using the Latent Interaction Testing (LIT)\nframework. LIT is a flexible kernel-based approach that\nleverages information across multiple traits to detect latent\ngenetic interactions without specifying or observing the\ninteracting variable (e.g., environment). LIT accepts standard\nPLINK files as inputs to analyze large genome-wide association\nstudies.", "URL": "https://github.com/ajbass/lit", "License": "LGPL", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libx11-dev", "Repository": "https://ajbass.r-universe.dev", "Date/Publication": "2025-07-26 09:33:01 UTC", "RemoteUrl": "https://github.com/ajbass/lit", "RemoteRef": "HEAD", "RemoteSha": "451458885c00dc758cddc1b8c24944959bc33fdd", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-13 10:36:28 UTC", "User": "root" }, "Author": "Andrew Bass [aut, cre],\nMichael Epstein [aut]", "_user": "ajbass", "_type": "src", "_file": "lit_1.0.1.tar.gz", "_fileid": "https://r2.ropensci.org/f3be7fe76dc34fddfb5a5737f2c33bc13c0e6deefcdc672af6cbe92f55734016", "_filesize": 123272, "_sha256": "f3be7fe76dc34fddfb5a5737f2c33bc13c0e6deefcdc672af6cbe92f55734016", "_expires": "2026-10-13T06:08:03.000Z", "_created": "2026-06-13T10:36:28.000Z", "_published": "2026-07-05T06:08:05.500Z", "_jobs": [ { "job": 85197970248, "time": 167, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7610001073" }, { "job": 85197970277, "time": 169, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7610001350" }, { "job": 85197970443, "time": 189, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7610003711" }, { "job": 85197970235, "time": 153, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7609999541" }, { "job": 85197970360, "time": 186, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7609999064" }, { "job": 85197970295, "time": 352, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7610017420" }, { "job": 85197970264, "time": 155, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7609997487" }, { "job": 85197970282, "time": 358, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7610019412" }, { "job": 85197970101, "time": 260, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7609983164" }, { "job": 85197970237, "time": 146, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7609998769" }, { "job": 85197970207, "time": 173, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7610002210" }, { "job": 85197970292, "time": 215, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7610006556" }, { "job": 85197970246, "time": 183, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7610004274" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338", "_status": "success", "_upstream": "https://github.com/ajbass/lit", "_commit": { "id": "451458885c00dc758cddc1b8c24944959bc33fdd", "author": "Andrew Bass ", "committer": "Andrew Bass ", "message": "updated readme\n", "time": 1753522381 }, "_maintainer": { "name": "Andrew Bass", "email": "ab3105@cam.ac.uk", "login": "ajbass", "description": "Researcher, PhD @StoreyLab ", "uuid": 7573657 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.11", "role": "Imports" }, { "package": "genio", "role": "Imports" }, { "package": "CompQuadForm", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "ajbass", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 4 } ], "_tags": [], "_stars": 2, "_userbio": { "uuid": 7573657, "type": "user", "name": "Andrew Bass", "description": "Researcher, PhD @StoreyLab " }, "_downloads": { "count": 156, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/lit" }, "_devurl": "https://github.com/ajbass/lit", "_searchresults": 15, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/lit.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ajbass/lit", "_realowner": "ajbass", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2023-08-15" }, { "version": "1.0.1", "date": "2025-08-01" } ], "_exports": [ "gamut_plink", "lit", "lit_plink", "marginal", "marginal_plink" ], "_help": [ { "page": "gamut_plink", "title": "GAMuT", "topics": [ "gamut_plink" ] }, { "page": "lit", "title": "Latent Interaction Testing", "topics": [ "lit" ] }, { "page": "lit_h", "title": "LIT correcting for dominance effects", "topics": [ "lit_h" ] }, { "page": "lit_plink", "title": "Latent Interaction Testing", "topics": [ "lit_plink" ] }, { "page": "marginal", "title": "Marginal (SQ/CP) approach", "topics": [ "marginal" ] }, { "page": "marginal_plink", "title": "Marginal (SQ/CP) approach", "topics": [ "marginal_plink" ] } ], "_readme": "https://github.com/ajbass/lit/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "cli", "clipr", "CompQuadForm", "cpp11", "crayon", "dplyr", "generics", "genio", "glue", "hms", "lifecycle", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "R6", "Rcpp", "RcppArmadillo", "RcppEigen", "readr", "rlang", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "withr" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "lit.Rmd", "filename": "lit.html", "title": "lit Package Vignette", "author": "Andrew J. Bass and Michael P. Epstein", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Installation", "Quick start" ], "created": "2023-08-11 16:30:15", "modified": "2023-08-12 15:30:14", "commits": 2 } ], "_score": 4.176091259055681, "_indexed": true, "_nocasepkg": "lit", "_universes": [ "ajbass" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-06-13T10:39:20.000Z", "distro": "noble", "arch": "aarch64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/b7c803a02ad282c79bd89217bd9c11997210dc793630ccf216f761c59f9f64ac", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-06-13T10:39:26.000Z", "distro": "noble", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/ab09ae8b94af12841b33e56af60221bfcb0421ed1bbb95bd1550bdd4bf427759", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-06-13T10:39:36.000Z", "distro": "noble", "arch": "aarch64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/1c605e4420790dc3c8838f81139bde143b4980f07b97b9fb0c5a5ab1dbd8d3a1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1", "date": "2026-06-13T10:39:12.000Z", "distro": "noble", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/72268033097790c7bd59c92158d535753653032c37f1d66780dbc6b7c86b8ee8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-06-13T10:39:22.000Z", "arch": "aarch64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/1bfc8ed95f1c0f98ae2c2e811ff919b4b4ae68a03d6f97722859d2d90033c16b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1", "date": "2026-06-13T10:41:20.000Z", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/658ebcb1f3f14d25e5dfb823e8d935d8e414b062731e45992fca0696034bec36", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-06-13T10:39:03.000Z", "arch": "aarch64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/fc888d041a47f3f12ecbf4dbe90a742a7c3602861665d565174e79c6f33f89e5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1", "date": "2026-06-13T10:41:20.000Z", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/d15694c5c8de7e1e8240f04c970cdc418d5849013ed2633521cc230ada084e18", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-06-13T10:39:20.000Z", "arch": "emscripten", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/8756894087e6330d9b11a18ef6e3cc0f74d6eb8072611fe8165af4a76739e8c7", "status": "success", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-06-13T10:38:41.000Z", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/38015f567f22b10585ece9b781a2fc818902936167fd3ab0b2cba37abb54edb9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.5.3", "os": "win", "version": "1.0.1", "date": "2026-06-13T10:39:39.000Z", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/8fe73e952ebfd1c35092bfab45bda7eb0d2b62797fe0ce892f511db3e178e469", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" }, { "r": "4.6.0", "os": "win", "version": "1.0.1", "date": "2026-06-13T10:38:43.000Z", "arch": "x86_64", "commit": "451458885c00dc758cddc1b8c24944959bc33fdd", "fileid": "https://r2.ropensci.org/df95302961159b1635670d460ae80738e3676f22970f71283c0125b31ef297de", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/ajbass/actions/runs/27464279338" } ] }